Rogue Fighters

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I had a large group of fighters out during a faction war. Got overwhelmed as the oposing faction decided i was top threat and started beating on me. I fled before my fighters returned to my hanger. I have since returned to the sector to see my large group of fighter wreaking havoc on any ship they can find. I immediately start getting a reputation decrease as those little bastards ping anything they can find. Is there a way to call them back or shoot them down?